Circuits team
Haber, S. N., Lehman, J., Maffei, C., Yendiki, A. (2023). The Rostral Zona Incerta: A Subcortical Integrative Hub and Potential Deep Brain Stimulation Target for Obsessive-Compulsive Disorder. Biological psychiatry, 93(11), 1010–1022.
Hollunder, B., Ostrem, J. L., Sahin, I. A., Rajamani, N., Oxenford, S., Butenko, K., Neudorfer, C., Reinhardt, P., Zvarova, P., Polosan, M., Akram, H., Vissani, M., Zhang, C., Sun, B., Navratil, P., Reich, M. M., Volkmann, J., Yeh, F. C., Baldermann, J. C., Dembek, T. A., … Horn, A. (2023). Mapping Dysfunctional Circuits in the Frontal Cortex Using Deep Brain Stimulation. medRxiv, 2023.03.07.23286766.
Computational team
Sundaresan,V., Lehman, J. F., Fitzgibbon, S., Jbabdi, S., Haber, S. N., Yendiki, A. (2022). Constrained self-supervised method with temporal ensembling for fiber bundle detection on anatomic tracing data, arXiv, 2208.03569.
C. Maffei, G. Girard, K.G. Schilling, D.B. Aydogan, N. Adluru, A. Zhylka, Y. Wu, M. Mancini, A. Hamamci, A. Sarica, A. Teillac, S.H. Baete, D. Karimi, F.-C. Yeh, M.E. Yildiz, A. Gholipour, Y. Bihan-Poudec, B. Hiba, A. Quattrone, A. Quattrone, P.-T. Yap, A. de Luca, J. Pluim, A. Leemans, V. Prabhakaran, B.B. Bendlin, A.L. Alexander, B.A. Landman, E.J. Canales-Rodríguez, M. Barakovic, J. Rafael-Patino, T. Yu, G. Rensonnet, S. Schiavi, A. Daducci, M. Pizzolato, E. Fischi-Gomez, J.-P. Thiran, G. Dai, G. Grisot, N. Lazovski, S. Puch, M. Ramos, P. Rodrigues, V. Prchkovska, R. Jones, J. Lehman, S.N. Haber, A. Yendiki (2022). Insights from the IronTract challenge: optimal methods for mapping brain pathways from multi-shell diffusion MRI, NeuroImage, 257:119327.
Casamitjana, A., Lorenzi, M., Ferraris, S., Peter, L., Modat, M., Stevens, A., Fischl, B., Vercauteren, T., & Iglesias, J. E. (2022). Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical image analysis, 75, 102265.
MRI team
Ramos-Llordén, G., Park, D., Kirsch, J. E., Scholz, A., Keil, B., Maffei, C., Lee, H. H., Bilgiç, B., Edlow, B. L., Mekkaoui, C., Yendiki, A., Witzel, T., & Huang, S. Y. (2023). Eddy current-induced artifacts correction in high gradient strength diffusion MRI with dynamic field monitoring: demonstration in ex vivo human brain imaging, bioRxiv, 2023.02.15.528684.
Huang, S. Y., Witzel, T., Keil, B., Scholz, A., Davids, M., Dietz, P., Rummert, E., Ramb, R., Kirsch, J. E., Yendiki, A., Fan, Q., Tian, Q., Ramos-Llordén, G., Lee, H. H., Nummenmaa, A., Bilgic, B., Setsompop, K., Wang, F., Avram, A. V., Komlosh, M., … Rosen, B. R. (2021). Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. NeuroImage, 243, 118530.
Optical microscopy team
Voleti, V., Patel, K. B., Li, W., Perez Campos, C., Bharadwaj, S., Yu, H., Ford, C., Casper, M. J., Yan, R. W., Liang, W., Wen, C., Kimura, K. D., Targoff, K. L., & Hillman, E. M. C. (2019). Real-time volumetric microscopy of in vivo dynamics and large-scale samples with SCAPE 2.0. Nature methods, 16(10), 1054–1062.
Wang, H., Magnain, C., Wang, R., Dubb, J., Varjabedian, A., Tirrell, L. S., Stevens, A., Augustinack, J. C., Konukoglu, E., Aganj, I., Frosch, M. P., Schmahmann, J. D., Fischl, B., & Boas, D. A. (2018). as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. NeuroImage, 165, 56–68.
X-ray microscopy team
Walsh, C. L., Tafforeau, P., Wagner, W. L., Jafree, D. J., Bellier, A., Werlein, C., Kühnel, M. P., Boller, E., Walker-Samuel, S., Robertus, J. L., Long, D. A., Jacob, J., Marussi, S., Brown, E., Holroyd, N., Jonigk, D. D., Ackermann, M., & Lee, P. D. (2021). Imaging intact human organs with local resolution of cellular structures using hierarchical phase-contrast tomography. Nature methods, 18(12), 1532–1541.